PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 906087
Common NameARALYDRAFT_906087
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 1379aa    MW: 154908 Da    PI: 7.7631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
906087genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004912611286123
               EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
               y+C    C++sFs+  +L+ H r+ +
   906087 1261 YQCDmeGCTMSFSSEKQLTLHKRNiC 1286
               99********************9877 PP

2zf-C2H215.16.8e-0512861308323
               ET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
               Cp   Cgk F ++ +L++H+r+H
   906087 1286 CPvkGCGKNFFSHKYLVQHQRVH 1308
               9999*****************99 PP

3zf-C2H211.90.0006713441370123
               EEET..TTTEEESSHHHHHHHHHH..T CS
  zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
               y+C    Cg++F+  s++ rH r+  H
   906087 1344 YVCAepGCGQTFRFVSDFSRHKRKtgH 1370
               899999****************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-161960IPR003349JmjN domain
PROSITE profilePS5118313.6892061IPR003349JmjN domain
PfamPF023757.8E-142154IPR003349JmjN domain
SuperFamilySSF511972.22E-26118179No hitNo description
SMARTSM005581.7E-50200369IPR003347JmjC domain
PROSITE profilePS5118432.65203369IPR003347JmjC domain
SuperFamilySSF511972.22E-26218386No hitNo description
PfamPF023732.7E-37233352IPR003347JmjC domain
SMARTSM003557.512611283IPR015880Zinc finger, C2H2-like
SMARTSM003550.0112841308IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.17312841313IPR007087Zinc finger, C2H2
PROSITE patternPS00028012861308IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-612861312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.61E-1013001342No hitNo description
Gene3DG3DSA:3.30.160.605.3E-913131337IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2413141343IPR007087Zinc finger, C2H2
SMARTSM003557.0E-413141338IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013161338IPR007087Zinc finger, C2H2
SuperFamilySSF576673.04E-813321366No hitNo description
Gene3DG3DSA:3.30.160.601.9E-913381367IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.03213441375IPR007087Zinc finger, C2H2
SMARTSM003550.6213441370IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013461370IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1379 aa     Download sequence    Send to blast
MAVSEQSQDV FPWLKSLPVA PEFRPTLAEF QDPIAYIFKI EEEASRYGIC KILPPLPPPS  60
KKTSISNLNR SLAARAAARV RDGGESSFDY DGGPTFATRQ QQIGFCPRKQ RPVQRPVWQS  120
GEHYSFGEFE AKAKTFEKNY LKKCGKKSQL SALEIETLYW RATVDKPFSV EYANDMPGSA  180
FIPLSLAAAR RREYGGDGGT VGETAWNMRA MSRAEGSLLK FMKEEIPGVT SPMVYIAMMF  240
SWFAWHVEDH DLHSLNYLHM GAGKTWYGVP KDAAVAFEEV VRVHGYGGEL NPLVTISTLG  300
EKTTVMSPEV FVKAGIPCCR LVQNPGEFVV TFPRAYHSGF SHGFNCGEAS NIATPEWLRV  360
AKDAAIRRAA INYPPMVSHL QLLYDYALAL GSRVPTSINT KPRSSRLKDK KRSEGERLTK  420
KLFVQNIIHN NELLSSLGKG SPVALLPQSS SDISVCSDLR IGSNLITNQE NPIQLKSEDL  480
SSHSVMVGLN NGLKNTVSVK EKFTSLCERN RNHLASSEKE TQETLSDAER RKNDRAVALS  540
DQRLFSCVTC GVLSFDCVAI VQPKEAAARY LMSADCSFFN DWTVVSGSAN LGQAARSLHL  600
QSTEKHDMDF FYNVPSQTTD HSMNTGDQKT STVSLTTAHK KDGALSLLAS AYGDSSDSEE  660
EGHKVLDAFV SEDRKYDQSG SCAYEASSFD TDGKEEARDG QSSDSNRQRL VCRKETGVVQ  720
GSNATSTCST LSCTTEHSRL RKGSNTSLPF VPRSDNDSSR LHVFCLEHAA EVEQKLLPIG  780
GIHLMLLSHP EYPRIEAEAK IVSEELVINH DWNDTEFRNV TREDEETIQA ALDNVEAKAG  840
NSDWTVKLGI NLSYSAILSR SPLYSKQMPY NSVIYNAFGR SSPAKSSPLK PEIFGRRSSR  900
QRKYVVGKWC GKVWMSHQVH PFLLEQDLEG EESERSCHLR AAMDEDAAGK RFFPNNVSRD  960
ATTMFGRKYC RKRKVRAKTV PRKKLTSFKR EDGVSDDTSE DHSYKQQWRA SGNEEESYFE  1020
TGNTVSGDSS NQMSDQQLKG IRRHRGVKEF ESNDEVSDRS LGEEYAVRER AISESSTENS  1080
FQLYGHSIDD NALEGSLYGH DDNKLYKHPK GLPRSKQTNV FRNPVSYDSE ENDVYQQRGN  1140
IQASRIGGEY ESEEDSLEEE DFCSTRKRQT RSTAKRKVKT EIVQSPRETN KEFDSYMEGP  1200
STRLRVKIPK PSRVSSETKA KKIGKKGSRN ASFSRVATEE DVEEEEEEEE KENEEEECAA  1260
YQCDMEGCTM SFSSEKQLTL HKRNICPVKG CGKNFFSHKY LVQHQRVHSD DRPLKCPWKG  1320
CNMTFKWAWS RTEHIRVHTG ARPYVCAEPG CGQTFRFVSD FSRHKRKTGH SVKKTKKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4igo_A1e-492035316360Os05g0196500 protein
4igp_A1e-492035316360Os05g0196500 protein
4igq_A1e-492035316360Os05g0196500 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1971983KRKVRAKTVPRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6644990.0AY664499.1 Arabidopsis thaliana relative of early flowering 6 (REF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875903.10.0hypothetical protein ARALYDRAFT_906087
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLD7LRW60.0D7LRW6_ARALL; Putative uncharacterized protein
STRINGscaffold_501791.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52592843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6